PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 111aa    MW: 12484.2 Da    PI: 4.9063
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03372.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB151.81.3e-4720107288
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.ylk 88 
                 reqdr+lPianv++imk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy+epl+  yl+
  KHN03372.1  20 REQDRLLPIANVGKIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRSwYLH 107
                 89********************************************************************************752666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-4517103IPR009072Histone-fold
SuperFamilySSF471132.26E-3422104IPR009072Histone-fold
PfamPF008081.8E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.2E-135371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.2E-137290No hitNo description
PRINTSPR006155.2E-1391109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MMDNVGGSSS NIAENSGIIR EQDRLLPIAN VGKIMKQILP PNAKISKESK ETMQECVSEF  60
ISFVTSEASE KCRKERRKTV NGDDICWALG SLGFDDYAEP LRSWYLHPFI D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4019104186Transcription factor HapC (Eurofung)
4g92_B2e-4019104186Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625184.11e-70PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-50NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0B2P6X16e-79A0A0B2P6X1_GLYSO; Nuclear transcription factor Y subunit B-5
STRINGGLYMA17G02810.15e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-51nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]